Compatibility issues with large cooler heatsinks or water blocks may arise with some Mini-ITX motherboards due to VRM heatsinks / backplates and limited space available. Unfortunately such issues cannot be automatically identified, for this reason the only way of knowing in advance is to check directly with the motherboard's or cooler's manufacturer.
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This is not a full list of compatible parts. Always check the manufacturer's website to verify possible incompatibilities between components.